Extract YAML function
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@ -2,6 +2,7 @@
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# coding=utf-8
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from argparse import Namespace
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from pathlib import Path
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from typing import Optional
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import logging
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@ -54,13 +55,7 @@ class Configuration(Namespace):
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def process_click_arguments(self, context: click.Context):
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if context.params.get('opts') is not None:
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with open(context.params['opts']) as f:
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opts = yaml.load(f, Loader=yaml.FullLoader)
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for arg_key, val in opts.items():
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if not hasattr(self, arg_key):
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logger.error(f'Ignoring an unknown YAML argument: {arg_key}')
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continue
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setattr(self, arg_key, val)
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self.parse_yaml_options(context.params['opts'])
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for arg_key in context.params.keys():
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if not hasattr(self, arg_key):
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logger.warning(f'Ignoring an unknown CLI argument: {arg_key}')
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@ -70,3 +65,20 @@ class Configuration(Namespace):
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# don't overwrite with an empty value
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continue
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setattr(self, arg_key, val)
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def parse_yaml_options(self, file_path: str):
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yaml_file_loc = Path(file_path)
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if not yaml_file_loc.exists():
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logger.error(f'No YAML file found at {yaml_file_loc}')
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return
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with open(yaml_file_loc) as f:
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try:
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opts = yaml.load(f, Loader=yaml.FullLoader)
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except yaml.YAMLError as e:
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logger.error(f'Could not parse YAML options file: {e}')
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return
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for arg_key, val in opts.items():
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if not hasattr(self, arg_key):
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logger.error(f'Ignoring an unknown YAML argument: {arg_key}')
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continue
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setattr(self, arg_key, val)
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