mirror of
https://github.com/bluxmit/alnoda-workspaces.git
synced 2024-07-04 14:10:19 +12:00
64 lines
1.8 KiB
Bash
64 lines
1.8 KiB
Bash
#!/bin/bash
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set -e
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UBUNTU_VERSION=${UBUNTU_VERSION:-focal}
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CRAN_LINUX_VERSION=${CRAN_LINUX_VERSION:-cran40}
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LANG=${LANG:-en_US.UTF-8}
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LC_ALL=${LC_ALL:-en_US.UTF-8}
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DEBIAN_FRONTEND=noninteractive
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# Set up and install R
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R_HOME=${R_HOME:-/usr/lib/R}
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#R_VERSION=${R_VERSION}
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apt-get update
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apt-get -y install --no-install-recommends \
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ca-certificates \
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less \
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libopenblas-base \
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locales \
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vim-tiny \
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wget \
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dirmngr \
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gpg \
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gpg-agent
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echo "deb http://cloud.r-project.org/bin/linux/ubuntu ${UBUNTU_VERSION}-${CRAN_LINUX_VERSION}/" >> /etc/apt/sources.list
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gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
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gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | apt-key add -
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# Wildcard * at end of version will grab (latest) patch of requested version
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apt-get update && apt-get -y install --no-install-recommends r-base-dev=${R_VERSION}*
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rm -rf /var/lib/apt/lists/*
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## Add PPAs: NOTE this will mean that installing binary R packages won't be version stable.
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##
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## These are required at least for bionic-based images since 3.4 r binaries are
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echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
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locale-gen en_US.utf8
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/usr/sbin/update-locale LANG=${LANG}
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Rscript -e "install.packages(c('littler', 'docopt'))"
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## By default R_LIBS_SITE is unset, and defaults to this, so this is where `littler` will be.
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## We set it here for symlinks, but don't make the env var persist (since it's already the default)
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R_LIBS_SITE=/usr/local/lib/R/site-library
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ln -s ${R_LIBS_SITE}/littler/examples/install.r /usr/local/bin/install.r
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ln -s ${R_LIBS_SITE}/littler/examples/install2.r /usr/local/bin/install2.r
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ln -s ${R_LIBS_SITE}/littler/examples/installGithub.r /usr/local/bin/installGithub.r
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ln -s ${R_LIBS_SITE}/littler/bin/r /usr/local/bin/r
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