mirror of
https://github.com/bluxmit/alnoda-workspaces.git
synced 2024-06-29 11:40:21 +12:00
133 lines
4.1 KiB
Bash
133 lines
4.1 KiB
Bash
#!/bin/bash
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## Download and install RStudio server & dependencies uses.
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##
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## In order of preference, first argument of the script, the RSTUDIO_VERSION variable.
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## ex. stable, preview, daily, 1.3.959, 2021.09.1+372, 2021.09.1-372, 2022.06.0-daily+11
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set -e
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RSTUDIO_VERSION=${1:-${RSTUDIO_VERSION:-"stable"}}
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DEFAULT_USER=${DEFAULT_USER:-"rstudio"}
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# a function to install apt packages only if they are not installed
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function apt_install() {
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if ! dpkg -s "$@" >/dev/null 2>&1; then
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if [ "$(find /var/lib/apt/lists/* | wc -l)" = "0" ]; then
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apt-get update
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fi
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apt-get install -y --no-install-recommends "$@"
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fi
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}
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apt_install \
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lsb-release \
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file \
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git \
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libapparmor1 \
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libclang-dev \
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libcurl4-openssl-dev \
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libedit2 \
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libobjc4 \
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libssl-dev \
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libpq5 \
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lsb-release \
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psmisc \
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procps \
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python-setuptools \
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pwgen \
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sudo \
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wget
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ARCH=$(dpkg --print-architecture)
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UBUNTU_VERSION=$(lsb_release -sc)
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# install s6 supervisor
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/rocker_scripts/install_s6init.sh
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## Download RStudio Server for Ubuntu 18+
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DOWNLOAD_FILE=rstudio-server.deb
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if [ "$RSTUDIO_VERSION" = "latest" ]; then
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RSTUDIO_VERSION="stable"
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fi
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if [ "$UBUNTU_VERSION" = "focal" ]; then
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UBUNTU_VERSION="bionic"
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fi
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if [ "$RSTUDIO_VERSION" = "stable" ] || [ "$RSTUDIO_VERSION" = "preview" ] || [ "$RSTUDIO_VERSION" = "daily" ]; then
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wget "https://rstudio.org/download/latest/${RSTUDIO_VERSION}/server/${UBUNTU_VERSION}/rstudio-server-latest-${ARCH}.deb" -O "$DOWNLOAD_FILE"
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else
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wget "https://download2.rstudio.org/server/${UBUNTU_VERSION}/${ARCH}/rstudio-server-${RSTUDIO_VERSION/"+"/"-"}-${ARCH}.deb" -O "$DOWNLOAD_FILE" ||
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wget "https://s3.amazonaws.com/rstudio-ide-build/server/${UBUNTU_VERSION}/${ARCH}/rstudio-server-${RSTUDIO_VERSION/"+"/"-"}-${ARCH}.deb" -O "$DOWNLOAD_FILE"
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fi
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dpkg -i "$DOWNLOAD_FILE"
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rm "$DOWNLOAD_FILE"
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# https://github.com/rocker-org/rocker-versioned2/issues/137
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rm -f /var/lib/rstudio-server/secure-cookie-key
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## RStudio wants an /etc/R, will populate from $R_HOME/etc
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mkdir -p /etc/R
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## Make RStudio compatible with case when R is built from source
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## (and thus is at /usr/local/bin/R), because RStudio doesn't obey
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## path if a user apt-get installs a package
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R_BIN=$(which R)
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echo "rsession-which-r=${R_BIN}" >/etc/rstudio/rserver.conf
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## use more robust file locking to avoid errors when using shared volumes:
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echo "lock-type=advisory" >/etc/rstudio/file-locks
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## Prepare optional configuration file to disable authentication
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## To de-activate authentication, `disable_auth_rserver.conf` script
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## will just need to be overwrite /etc/rstudio/rserver.conf.
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## This is triggered by an env var in the user config
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cp /etc/rstudio/rserver.conf /etc/rstudio/disable_auth_rserver.conf
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echo "auth-none=1" >>/etc/rstudio/disable_auth_rserver.conf
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## Set up RStudio init scripts
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mkdir -p /etc/services.d/rstudio
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cat <<"EOF" >/etc/services.d/rstudio/run
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#!/usr/bin/with-contenv bash
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## load /etc/environment vars first:
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for line in $( cat /etc/environment ) ; do export $line > /dev/null; done
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exec /usr/lib/rstudio-server/bin/rserver --server-daemonize 0
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EOF
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cat <<EOF >/etc/services.d/rstudio/finish
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#!/bin/bash
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/usr/lib/rstudio-server/bin/rstudio-server stop
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EOF
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# If CUDA enabled, make sure RStudio knows (config_cuda_R.sh handles this anyway)
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if [ -n "$CUDA_HOME" ]; then
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sed -i '/^rsession-ld-library-path/d' /etc/rstudio/rserver.conf
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echo "rsession-ld-library-path=$LD_LIBRARY_PATH" >>/etc/rstudio/rserver.conf
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fi
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# Log to stderr
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cat <<EOF >/etc/rstudio/logging.conf
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[*]
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log-level=warn
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logger-type=syslog
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EOF
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# set up default user
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/rocker_scripts/default_user.sh "${DEFAULT_USER}"
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# install user config initiation script
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cp /rocker_scripts/init_set_env.sh /etc/cont-init.d/01_set_env
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cp /rocker_scripts/init_userconf.sh /etc/cont-init.d/02_userconf
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cp /rocker_scripts/pam-helper.sh /usr/lib/rstudio-server/bin/pam-helper
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# Clean up
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rm -rf /var/lib/apt/lists/*
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# Check the RStudio Server version
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echo -e "Check the RStudio Server version...\n"
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/usr/lib/rstudio-server/bin/rstudio-server version
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echo -e "\nInstall RStudio Server, done!" |