mirror of
https://github.com/bluxmit/alnoda-workspaces.git
synced 2024-05-16 12:02:19 +12:00
178 lines
3.6 KiB
Bash
178 lines
3.6 KiB
Bash
#!/bin/bash
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set -e
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## Install PROJ, GDAL, GEOS from source.
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##
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## 'latest' means installing the latest release version.
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## build ARGs
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NCPUS=${NCPUS:-"-1"}
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PROJ_VERSION=${PROJ_VERSION:-"latest"}
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GDAL_VERSION=${GDAL_VERSION:-"latest"}
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GEOS_VERSION=${GEOS_VERSION:-"latest"}
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CRAN=${CRAN_SOURCE:-"https://cloud.r-project.org"}
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echo "options(repos = c(CRAN = '${CRAN}'))" >>"${R_HOME}/etc/Rprofile.site"
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# a function to install apt packages only if they are not installed
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function apt_install() {
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if ! dpkg -s "$@" >/dev/null 2>&1; then
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if [ "$(find /var/lib/apt/lists/* | wc -l)" = "0" ]; then
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apt-get update
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fi
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apt-get install -y --no-install-recommends "$@"
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fi
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}
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function url_latest_gh_released_asset() {
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wget -qO- "https://api.github.com/repos/$1/releases/latest" | grep -oP "(?<=\"browser_download_url\":\s\")https.*\.tar.gz(?=\")"
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}
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export DEBIAN_FRONTEND=noninteractive
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apt_install \
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gdb \
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git \
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libcairo2-dev \
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libcurl4-openssl-dev \
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libexpat1-dev \
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libpq-dev \
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libsqlite3-dev \
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libudunits2-dev \
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make \
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pandoc \
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qpdf \
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sqlite3 \
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subversion \
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valgrind \
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vim \
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tk-dev \
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wget \
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libv8-dev \
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libjq-dev \
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libprotobuf-dev \
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libxml2-dev \
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libprotobuf-dev \
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protobuf-compiler \
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unixodbc-dev \
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libssh2-1-dev \
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libgit2-dev \
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libnetcdf-dev \
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locales \
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libssl-dev \
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libtiff-dev \
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cmake \
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libtiff5-dev
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LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
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# install geos
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# https://libgeos.org/usage/download/
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if [ "$GEOS_VERSION" = "latest" ]; then
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GEOS_VERSION=$(wget -qO- "https://api.github.com/repos/libgeos/geos/git/refs/tags" | grep -oP "(?<=\"ref\":\s\"refs/tags/)\d+\.\d+\.\d+" | tail -n -1)
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fi
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wget http://download.osgeo.org/geos/geos-"${GEOS_VERSION}".tar.bz2
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bzip2 -d geos-*bz2
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tar xf geos*tar
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rm geos*tar
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cd geos*
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./configure
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make
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make install
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cd ..
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ldconfig
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# install proj
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# https://download.osgeo.org/proj/
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if [ "$PROJ_VERSION" = "latest" ]; then
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PROJ_DL_URL=$(url_latest_gh_released_asset "OSGeo/PROJ")
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else
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PROJ_DL_URL="http://download.osgeo.org/proj/proj-${PROJ_VERSION}.tar.gz"
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fi
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wget "$PROJ_DL_URL" -O proj.tar.gz
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tar zxvf proj.tar.gz
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rm proj.tar.gz
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cd proj-*
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mkdir build
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cd build
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cmake ..
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make
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make install
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cd ../..
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ldconfig
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# install gdal
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# https://download.osgeo.org/gdal/
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if [ "$GDAL_VERSION" = "latest" ]; then
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GDAL_DL_URL=$(url_latest_gh_released_asset "OSGeo/gdal")
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else
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GDAL_DL_URL="https://download.osgeo.org/gdal/${GDAL_VERSION}/gdal-${GDAL_VERSION}.tar.gz"
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fi
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wget "$GDAL_DL_URL" -O gdal.tar.gz
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tar -xf gdal.tar.gz
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rm gdal.tar.gz
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cd gdal*
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./configure
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make
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make install
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cd ..
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ldconfig
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install2.r --error --skipmissing --skipinstalled -n "$NCPUS" \
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sp \
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rgeos \
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rgdal \
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RPostgreSQL \
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RSQLite \
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testthat \
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knitr \
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tidyr \
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geosphere \
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maptools \
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maps \
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microbenchmark \
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raster \
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dplyr \
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tibble \
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units \
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DBI \
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covr \
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protolite \
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tmap \
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mapview \
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odbc \
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pool \
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rmarkdown \
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RPostgres \
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spatstat \
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stars
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git clone --depth 1 https://github.com/r-spatial/sf.git
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git clone --depth 1 https://github.com/r-spatial/lwgeom.git
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git clone --depth 1 https://github.com/r-spatial/stars.git
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R CMD build lwgeom
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R CMD INSTALL lwgeom
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rm -rf lwgeom*
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R CMD build sf
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R CMD INSTALL sf
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rm -rf sf*
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R CMD build stars
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R CMD INSTALL stars
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rm -rf stars*
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# Clean up
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rm -rf /var/lib/apt/lists/*
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rm -r /tmp/downloaded_packages
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# Check the geospatial packages
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echo -e "Check the packages...\n"
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R -q -e "library(lwgeom); library(sf); library(stars)"
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echo -e "\nInstall packages, done!"
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