# DATA WORKSTATION !!! # docker run -it -p 8085:8085 -p 8086:8086 -p 3000:3000 -p 8001:8000 -p 3012:3012 -p 8092:8092 -p 8448:8448 rg.fr-par.scw.cloud/dgym/base-data-workstation:3.9.0 ARG docker_registry=docker.io/alnoda ARG image_tag=2.2-3.8 ################################################################################################################################## ######################## BUILD (NBviewer) ################################################################################################################################## FROM python:3.8-buster as builder LABEL maintainer="Vadym Dolinin " ENV DEBIAN_FRONTEND=noninteractive ENV LANG=C.UTF-8 RUN apt-get update \ && apt-get install -yq --no-install-recommends \ ca-certificates \ libcurl4-gnutls-dev \ git \ nodejs \ npm RUN apt-get install -y libmemcached-dev zlib1g-dev # Python requirements COPY nbviewer/requirements-dev.txt /srv/nbviewer/ COPY nbviewer/requirements.txt /srv/nbviewer/ RUN python3 -mpip install -r /srv/nbviewer/requirements-dev.txt RUN python3 -mpip install -r /srv/nbviewer/requirements.txt WORKDIR /srv/nbviewer # Copy source tree in COPY nbviewer /srv/nbviewer RUN python3 setup.py build && \ python3 -mpip wheel -vv . -w /wheels ################################################################################################################################## ############################ FINAL ################################################################################################################################## FROM ${docker_registry}/python-workspace:${image_tag} USER root RUN mkdir /home/vadym || true RUN chown -R vadym "/home/vadym" ################################################################# LUIGI ENV LUIGI_VERSION="3.0.3" ARG LUIGI_CONFIG_DIR="/opt/luigi/" RUN mkdir -p "${LUIGI_CONFIG_DIR}" COPY luigi/logging.conf "${LUIGI_CONFIG_DIR}" COPY luigi/luigi.conf "${LUIGI_CONFIG_DIR}" RUN mkdir -p /etc/service/luigid/ COPY luigi/luigid.sh "${LUIGI_CONFIG_DIR}" COPY luigi/examples /home/examples/luigi ################################################################# JUPYTER # Corresponds to "Jupyter-base-dev" ################################### ARG NB_USER="abc" ARG NB_UID="8877" ARG NB_GID="8877" # Fix DL4006 SHELL ["/bin/bash", "-o", "pipefail", "-c"] USER root # ---- Miniforge installer ---- # Default values can be overridden at build time # (ARGS are in lower case to distinguish them from ENV) # Check https://github.com/conda-forge/miniforge/releases # Conda version ARG conda_version="4.9.2" # Miniforge installer patch version ARG miniforge_patch_number="5" # Miniforge installer architecture ARG miniforge_arch="x86_64" # Python implementation to use # can be either Miniforge3 to use Python or Miniforge-pypy3 to use PyPy ARG miniforge_python="Miniforge3" # Miniforge archive to install ARG miniforge_version="${conda_version}-${miniforge_patch_number}" # Miniforge installer ARG miniforge_installer="${miniforge_python}-${miniforge_version}-Linux-${miniforge_arch}.sh" # Miniforge checksum ARG miniforge_checksum="49dddb3998550e40adc904dae55b0a2aeeb0bd9fc4306869cc4a600ec4b8b47c" # Install all OS dependencies for notebook server that starts but lacks all # features (e.g., download as all possible file formats) RUN DEBIAN_FRONTEND=noninteractive apt-get update \ && apt-get install -yq --no-install-recommends \ wget \ ca-certificates \ sudo \ locales \ fonts-liberation \ run-one \ && apt-get clean && rm -rf /var/lib/apt/lists/* RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \ locale-gen # Configure environment ENV CONDA_DIR=/opt/conda \ SHELL=/bin/bash \ NB_USER=$NB_USER \ NB_UID=$NB_UID \ NB_GID=$NB_GID \ LC_ALL=en_US.UTF-8 \ LANG=en_US.UTF-8 \ LANGUAGE=en_US.UTF-8 ENV PATH=$CONDA_DIR/bin:$PATH \ HOME=/home/$NB_USER \ CONDA_VERSION="${conda_version}" \ MINIFORGE_VERSION="${miniforge_version}" # Copy a script that we will use to correct permissions after running certain commands COPY jupyter/fix-permissions /usr/local/bin/fix-permissions RUN chmod a+rx /usr/local/bin/fix-permissions # Enable prompt color in the skeleton .bashrc before creating the default NB_USER # hadolint ignore=SC2016 RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashrc && \ # Add call to conda init script see https://stackoverflow.com/a/58081608/4413446 echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc # Create NB_USER with name and in the 'users' group # and make sure these dirs are writable by the `users` group. RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \ sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \ sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \ useradd -m -s /bin/bash -N -u $NB_UID $NB_USER || true && \ mkdir -p $CONDA_DIR && \ chown $NB_USER:$NB_GID $CONDA_DIR && \ chmod g+w /etc/passwd && \ fix-permissions $HOME && \ fix-permissions $CONDA_DIR USER $NB_UID ARG PYTHON_VERSION=default # Setup work directory for backward-compatibility RUN mkdir "/home/$NB_USER/work" && \ fix-permissions "/home/$NB_USER" # Install conda as vadym and check the sha256 sum provided on the download site WORKDIR /tmp # Prerequisites installation: conda, pip, tini RUN wget --quiet "https://github.com/conda-forge/miniforge/releases/download/${miniforge_version}/${miniforge_installer}" && \ echo "${miniforge_checksum} *${miniforge_installer}" | sha256sum --check && \ /bin/bash "${miniforge_installer}" -f -b -p $CONDA_DIR && \ rm "${miniforge_installer}" && \ # Conda configuration see https://conda.io/projects/conda/en/latest/configuration.html echo "conda ${CONDA_VERSION}" >> $CONDA_DIR/conda-meta/pinned && \ conda config --system --set auto_update_conda false && \ conda config --system --set show_channel_urls true && \ if [ ! $PYTHON_VERSION = 'default' ]; then conda install --yes python=$PYTHON_VERSION; fi && \ conda list python | grep '^python ' | tr -s ' ' | cut -d '.' -f 1,2 | sed 's/$/.*/' >> $CONDA_DIR/conda-meta/pinned && \ conda install --quiet --yes \ "conda=${CONDA_VERSION}" \ 'pip' \ 'tini=0.18.0' && \ conda update --all --quiet --yes && \ conda list tini | grep tini | tr -s ' ' | cut -d ' ' -f 1,2 >> $CONDA_DIR/conda-meta/pinned && \ conda clean --all -f -y && \ rm -rf /home/$NB_USER/.cache/yarn && \ fix-permissions $CONDA_DIR && \ fix-permissions /home/$NB_USER # Install Jupyter Notebook, Lab, and Hub # Generate a notebook server config # Cleanup temporary files # Correct permissions # Do all this in a single RUN command to avoid duplicating all of the # files across image layers when the permissions change RUN conda install --quiet --yes \ 'notebook=6.2.0' \ 'jupyterhub=1.3.0' \ 'jupyterlab=3.0.5' && \ conda clean --all -f -y && \ npm cache clean --force && \ jupyter notebook --generate-config && \ rm -rf $CONDA_DIR/share/jupyter/lab/staging && \ rm -rf /home/$NB_USER/.cache/yarn && \ fix-permissions $CONDA_DIR && \ fix-permissions /home/$NB_USER # Copy local files as late as possible to avoid cache busting COPY jupyter/start.sh jupyter/start-notebook.sh jupyter/start-singleuser.sh /usr/local/bin/ # Currently need to have both jupyter_notebook_config and jupyter_server_config to support classic and lab COPY jupyter/jupyter_notebook_config.py /etc/jupyter/ # Fix permissions on /etc/jupyter as root USER root # Prepare upgrade to JupyterLab V3.0 #1205 RUN sed -re "s/c.NotebookApp/c.ServerApp/g" \ /etc/jupyter/jupyter_notebook_config.py > /etc/jupyter/jupyter_server_config.py RUN chmod 0777 /usr/local/bin/start-notebook.sh RUN mkdir -p /var/log/supervisord RUN mkdir -p /home/project/notebooks ################################################################# NBVIEWER ENV LANG=C.UTF-8 RUN DEBIAN_FRONTEND=noninteractive apt-get update \ && apt-get install -yq --no-install-recommends \ ca-certificates \ libcurl4 \ git \ && apt-get clean && rm -rf /var/lib/apt/lists/* COPY --from=builder /wheels /wheels RUN python3 -mpip install --no-cache /wheels/* # To change the number of threads use env var NBVIEWER_THREADS # docker run -d -e NBVIEWER_THREADS=4 -p 80:8080 nbviewer ENV NBVIEWER_THREADS 2 # default - 2 threads RUN mkdir -p /home/nbviewer ################################################################# PACKAGES & MODULES #RUN apt-get install -y default-libmysqlclient-dev build-essential COPY requirements-base-data.txt /home/installed-python-packages/requirements-base-data.txt RUN pip install -r /home/installed-python-packages/requirements-base-data.txt ################## USER RUN chown -R vadym /var/log/supervisord RUN chown -R vadym /home/project/notebooks RUN chown -R vadym /home/vadym RUN chown -R vadym /opt/conda /etc/jupyter RUN chown -R vadym ${LUIGI_CONFIG_DIR} /etc/service/luigid/ RUN chown -R vadym /home/installed-python-packages RUN chown -R vadym /home/examples/luigi RUN chown -R vadym /home/nbviewer COPY data-workstation.conf /etc/supervisord/data-workstation.conf USER vadym